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Archives of Gastroenterology Research
ISSN: 2692-5427
Volume 5, Issue 1, p1-72
Articles published in this issue are Open Access and licensed under Creative Commons Attribution License (CC BY NC) where the readers can reuse, download, distribute the article in whole or part by mentioning proper credits to the authors.
Optical Insights into Fibrotic Livers: Applications of Near-Infrared Spectroscopy and Machine Learning
Liver fibrosis staging is critical for patient selection and management prior to transplantation, but biopsy is invasive and serum biomarkers lack accuracy. Near-infrared spectroscopy (NIRS) is an emerging non-invasive technology that can detect liver fibrosis via changes in tissue composition. Machine learning (ML) enables analysis of NIRS data for diagnostic modeling.
Arch Gastroenterol Res, 2024, Volume 5, Issue 1, p1-10 | DOI: 10.33696/Gastroenterology.5.048
Colonic Granular Cell Tumor
A 42-year-old asymptomatic woman presented for routine health checkup. Abdominal examination was unremarkable. The laboratory tests were normal. The chest radiograph, upper gastrointestinal endoscopy and abdominal computed tomography showed no abnormal findings. A colonoscopy was performed. A hepatic flexure polypoid mass (8 × 8 mm in diameter), covered with normal-appearing mucosa, was identified (Figure 1A).
Arch Gastroenterol Res, 2024, Volume 5, Issue 1, p11-12 | DOI: 10.33696/Gastroenterology.5.049
A Case of Carcinoma Ex Pleomorphic Adenoma
A 50 year old female presented to our institute with complaints of foreign body sensation in oral cavity, the patient was evaluated by ENT department and there was a mass in oropharynx and right tonsillar region, the growth was biopsied and reported as carcinoma ex pleomorphic adenoma. The patient was offered surgical treatment but refused and started on paclitaxel based chemotherapy but the mass continued to grow and it lead to such a point that it was causing occlusion in the nasal cavity as well as oral cavity leading to feeding and breathing difficulty as seen in Figure 1A.
Arch Gastroenterol Res, 2024, Volume 5, Issue 1, p13-14 | DOI: 10.33696/Gastroenterology.5.050
Enhancing Staff Safety in Swallowing Assessment: Insights Post COVID Pandemic
The COVID-19 pandemic was a time of significant challenge in the healthcare industry. In particular, hospitals worked diligently to develop protocols and guidelines to reduce viral transmission to both patients and staff. Service delivery concerning the instrumental assessment of swallowing evaluation was particularly challenging during the pandemic given the high risk of viral transmission to clinical staff. Clinical algorithms were developed with the goal of implementing a measured return to service delivery while preserving the clinical workforce.
Arch Gastroenterol Res, 2024, Volume 5, Issue 1, p15-20 | DOI: 10.33696/Gastroenterology.5.051
Enhancing Maternal Health: Cost-effective Alternatives in High Pressure Processing of Fruit Products
The search for efficacious Alternatives to the Current Standard Procedure in the Food Manufacturing Industry is a public health imperative. Recent advances and rapid adoption of high-pressure processing units in food manufacturing is gaining momentum across various industry sectors. The momentum of industrial importance across various sectors of food manufacturing, has led to requiring extensive microbiological hurdle validation studies for efficacious and feasible utilization of the technology.
Arch Gastroenterol Res, 2024, Volume 5, Issue 1, p21-41 | DOI: 10.33696/Gastroenterology.5.052
Obesity and Beyond: The Novel Technical Standard to Study the Small Bowel Microbiome
The small intestinal microbiome (SIM) is colonized by a variety of bacteria, archaea, viruses, and eukarya which contribute to the overall health of the human host. Commensal bacteria of the small intestine are crucial suppliers of essential nutrients, aid in the metabolism of indigestible carbohydrates, provide defenses against pathogenic bacteria, and are critical components of the mucosal architecture.
Arch Gastroenterol Res, 2024, Volume 5, Issue 1, p42-46 | DOI: 10.33696/Gastroenterology.5.053
Translating Molecular Heterogeneity into Precision Medicine for Advanced Liver Disease
Background: Liver fibrosis arises from chronic hepatic injury and involves the accumulation of extracellular matrix proteins. Fibrosis progression ultimately leads to cirrhosis, characterized by architectural distortion and complications. Molecular profiling has identified prognostic transcriptomic subtypes, but management remains limited for advanced disease. Methods: We conducted a systematic review of the literature to identify recent advances in characterizing liver cirrhosis subtypes and emerging therapies.
Arch Gastroenterol Res, 2024, Volume 5, Issue 1, p47-58 | DOI: 10.33696/Gastroenterology.5.054
Fecal Loading Evaluation by Two Radiological Scores: Comparisons between Functional Constipation and Irritable Bowel Syndrome-Constipation in Children and Adolescents
Compare fecal loading (FL) using Leech and Starreveld methods in children and adolescents with functional constipation (FC) or irritable bowel syndrome (IBS-C). Single-center, observational, retrospective, cross-sectional study of consecutive cases referred with unresponsive constipation. Inclusion criteria: FC and IBS-C, according to the Rome IV Criteria, age between 4 and 15 years old. Exclusion criteria: underlying chronic disorders, no medication during the two weeks preceding the radiography.
Arch Gastroenterol Res, 2024, Volume 5, Issue 1, p59-65 | DOI: 10.33696/Gastroenterology.5.055
A Case of Spontaneous Rectal Perforation in a Constipated Elderly Patient
An elderly male patient, aged 90 years, presented to the outpatient department of our institution with a documented history of constipation persisting for a span of twenty days, accompanied by bleeding per rectum exacerbated by straining. Notably, there were no alarming signs such as weight loss, loss of appetite, or anemia. The patient’s general and systemic examination yielded normal results, with laboratory parameters, including tumor markers such as serum CEA, within normal limits. Further evaluation through a proctoscopy examination revealed normal findings, following which the patient was prescribed laxatives and supportive treatments. However, the patient reported back following a few days with persistent symptoms including fever, chills, and rigors.
Arch Gastroenterol Res, 2024, Volume 5, Issue 1, p66-67 | DOI: 10.33696/Gastroenterology.5.056
Intestinal Intussusception in Adults Due to Lipoma: Is Preoperative Diagnosis Possible. Case Report and Literature Review
Intestinal intussusception in adults is quite rare, accounting for 1-5% of cases of intestinal semi-occlusion. The most frequent symptoms are nausea, vomiting and abdominal distension, as in any obstructive condition seen in the emergency room. Most cases of intestinal intussusception do not have a preoperative etiological diagnosis, due to difficulty in interpreting the radiological image. Case report of a 62-year-old male patient who was admitted to the emergency room at Hospital da Cidade in Salvador- Bahia- Brazil with semi-occlusion secondary to intestinal intussusception.
Arch Gastroenterol Res, 2024, Volume 5, Issue 1, p68-72 | DOI: 10.33696/Gastroenterology.5.057
Escherichia coli Stress, Multi-cellularity, and the Generation of the Quorum Sensing Peptide EDF
Bacterial communication via quorum sensing (QS) molecules, as well as toxin-antitoxin (TA) gene modules located on bacterial chromosomes are well-studied mechanisms. Escherichia coli mazEF is a stress-induced TA system mediating cell death requiring a QS extracellular death factor (EDF), the pentapeptide NNWNN. MazF is an endoribonuclease specific for ACA sites. During adverse conditions, the activated MazF generates a stress induced translation machinery, composed of MazF-processed mRNAs and selective ribosomes that specifically translate these processed mRNAs.
Constitutively Active Death Receptor Induces Apoptosis in Mammalian Cells
Apoptosis is a physiological response in development and homeostasis of metazoans. Apoptosis is triggered during pathological events as a means to renew affected tissues and eliminate cancer cells. The immune system regulates the extrinsic pathway of apoptosis, where signals such as TNFα or displayed ligands on the surface of immune cells trigger signal cascades by death receptors present on targeted cells. Therapeutics, like Doxorubicin, lead to apoptosis successfully.
Chimeric Antigen Receptor CAR NK Cells Emerging Immunotherapy for the Treatment of Cancer
Although NK cells are recognized as effector lymphocytes of the innate immune system, they also regulate the adaptive immune response by releasing inflammatory cytokines and developing immunological memory. Unlike other lymphocytes such as T or B cells, NK cells do not express rearrangeable, antigen-specific receptors.
Flow Cytometric Characterization of Accidental Cell Death Highlights Connections to Regulated Cell Death
Damage-Associated Molecular Patterns (DAMPs) are known by their nature to cause inflammatory responses in numerous disease states from cancer, trauma to age related diseases (e.g. atherosclerosis, Alzheimer’s and Parkinson’s diseases), these molecules are released by cells undergoing cell death.
Emerging Role of TRPML1 Mucolipin Endolysosomal Channel in Cancer
The transient receptor potential mucolipin 1 (TRPML1) is an endolysosomal channel belonging to the TRP family. Clinically, mutations of TRPML1 have been responsible for a severe lysosomal storage disorder called mucolipidosis type IV.
COVID-19 Clinical Research
While the global COVID-19 pandemic has challenged the entire humanity and health systems, it also triggered researchers to urgently perform clinical trials to assess the safety and efficacy of many agents and modalities to combat COVID-19. As of April 22, over 650 clinical studies have been registered both in USA and internationally. Results from these studies are also coming at a brisk pace in this unprecedented emergency.
Angioimmunoblastic T cell Lymphoma Microenvironment
Angioimmunoblastic T cell lymphoma (AITL) is one of the most common T-cell lymphomas, second only to peripheral T-cell lymphoma not otherwise specified (PTCL-NOS). Initially AITL was considered a non-malignant lymphadenopathy with immune hyperactivation, nowadays being classified as a PTCL.
Circulating Cell-Free RNA: A New Perspective for Endometrial Cancer
In order to implement the knowledge of cancer to monitor its evolution and setting, in the last decade, new minimally invasive and repeatable samples collection have been developed such as liquid biopsy. Cancer biomarkers originating from tumors can represent the molecular status of the tumor or its metastases which release them directly into body fluids or indirectly due to disruption of tumor/metastatic tissue. These biomarkers are detectable in liquid biopsy.
DILI, HILI, RUCAM Algorithm, and AI, the Artificial Intelligence: Provocative issues, Progress, and Proposals
Artificial Intelligence (AI) principles published in 1956 included the recommendation to use algorithms for solving complex processes. The creation of the Roussel Uclaf Causality Assessment Method (RUCAM) was published in 1993 with integration of an intelligent algorithm to solve issues of causality assessment in cases of complex suspected drug induced liver injury (DILI) cases. Other causality assessment methods (CAMs) published before the era of AI and RUCAM followed rather general principles without precise and valid algorithm.
Safety of Using Rituximab Therapy During COVID-19 Pandemic
Our modern world is facing extraordinary circumstances while passing through a serious pandemic caused by the novel coronavirus (COVID-19) which may lead to multi-organ system failure & death. Bcell depletion could compromise antiviral immunity, which makes the safety of rituximab use in the COVID19 era unclear.
The Potential Role of SEPT6 in Liver Fibrosis and Human Hepatocellular Carcinoma
Liver fibrosis is a reversible wound-healing response in which a variety of cells and factors are involved in and results in excessive deposition of extracellular matrix (ECM). Cirrhosis is one of the significant causes of portal hypertension and end-stage liver disease, and it is the 14th most common cause of death around the world. Approximately 1.03 million people worldwide die from liver cirrhosis every year.
Reduced BCR Signaling and a Metabolic Shift Accompanies Malignant Progression of Follicular Lymphoma: A Lesson from Transcriptomics
In the manuscript entitled “The ion channels and transporters gene expression profile indicates a shift in excitability and metabolisms during malignant progression of Follicular Lymphoma”, we reported recent advances in our understanding of how the gene expression profile of ion channels and transporters (ICT-GEP) contributes to identify specific signatures associated with Follicular Lymphoma (FL), with those FL that acquire chemoresistance after a relapsing-remitting course, and with the more aggressive Diffuse Large Cell Lymphoma (DLBCL), which in some cases represent the evolution of FLs.
Learning from Pitfall and Error: A Usefulness of Case Report
Case report is an important kind of article in medicine. The case report can be in several forms. A report might be on the new finding, new technique, rare condition or lesson learnt. The case report on pitfall and error is interesting. It is useful for giving lesson learnt to the reader. It should promote that the practitioner should report cases on lesson leant from pitfall and error that can be useful to the others in medical society.
Prognostic Utility of Ferritin Transferrin Ratio in Hepatocellular Carcinoma
There is growing body of literature to identify novel prognostic markers in hepatocellular carcinoma (HCC), including serum ferritin (SF), transferrin levels, alfa fetoprotein (AFP), and neutrophil to lymphocyte ratio (NLR). Chronic inflammation and fibrogenesis are considered quite essential in the oncogenesis of HCC. The trigger for this inflammation could range from viral hepatitis, alcoholic cirrhosis, to non-alcoholic fatty liver disease. Also, iron overload as in hereditary hemochromatosis is linked to one of the factors for HCC oncogenesis.
Prognosis and Survival of Medullary Carcinoma of the Breast
Medullary breast carcinoma (MBC) is a rare tumor, representing 3% to 5% of invasive breast carcinomas. The World Health Organization defines it as a well-circumscribed invasive tumor, composed of poorly differentiated cells, arranged in sheets, without gland formation and a scarce collagen stroma with the presence of a very prominent lymphoplasmacytic infiltrate.
Can Filtration Technology Advance Culture of Circulating Tumor Cells towards Precision Medicine?
Expansion of Circulating Tumor Cells (CTC), the metastatic seeds of cancer in the blood stream, holds great potential in clinical application, especially towards precision medicine. Given the relatively rare nature of CTCs, their culture remains to be a significant challenge. When developing technologies for CTC culture, there are key elements that need careful consideration, including the speed of culture, compatibility with downstream analysis, and the implementation of the technology into established clinical daily routines. Herein, we briefly discuss the implications of our recent report of an ultrathin filter for the capture and culture of circulating colon cancer cells.
Influence of Clinical Risk Factors on Outcomes in Men with Stage I Non-Seminomatous Germ Cell Tumor Undergoing Robot-Assisted Retroperitoneal Lymph Node Dissection
We recently published our multi-institutional experience performing primary robot-assisted retroperitoneal lymph node dissection (RA-RPLND) for men with non-seminomatous germ cell tumor (NSGCT). We concluded that primary RA-RPLND for NSGCT can be performed safely with low complication rates, acceptable early oncologic outcomes, and lower overall theoretical chemotherapy burden. In this commentary, we explore outcomes in clinical stage I patients stratified by clinical risk factors (RF) and estimate reductions in chemotherapy burden.
Sentinel Lymph Node Biopsy after Neoadjuvant Chemotherapy for Breast Cancer
Breast cancer is the second most common cancer worldwide, affecting nearly one in eight women. Accurate cancer staging is essential for determining the patient’s prognosis and for choosing the appropriate treatment. The staging system most often used is the American Joint Committee on Cancer (AJCC) TNM system, where T refers to the size of the tumor, N refers to spread of the primary cancer to nearby lymph nodes, and M refers to the spread of metastasis to distant sites in the body.
Platelet Hyperactivity and Dysfunction in Diabetes and Cancer
However, the entire coagulation cascade is dysfunctional, in progressed chronic diabetes and cancer patients. Platelets (PLTs) in type 2 diabetic (DT2) involved in Thrombosis and Haemostasis (T&H) of individuals adhere to vascular endothelium and aggregate more voluntarily than those in healthy individuals, as are abnormalities in the microvascular and macrovascular circulations. However it is already known that the circulating PLTs are essential for T&H, inflammation growth factors delivery, regeneration; and knowledge of their function is fundamental to understanding the pathophysiology of vascular disease in diabetes and cancer-related diseases.
Safety and Efficacy of s-MOX Regimen in Patients with Colorectal Cancer Who Developed Cardiotoxicity Following Fluoropyrimidine Administration: A Case Series
Fluoropyrimidines compose the backbone of regimens to treat many common solid tumors, including gastrointestinal (GI), breast and head/neck. As we continue to use these agents routinely, recognition of rare but real toxicities, such as cardiotoxicity, has also improved. The treatment options for patients who have encountered fluoropyrimidine-induced cardiotoxicity are limited as many anti-angiogenic drugs also pose a cardiac risk.
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