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Archives of Gastroenterology Research
ISSN: 2692-5427
Volume 6, Issue 1, p1-100
Articles published in this issue are Open Access and licensed under Creative Commons Attribution License (CC BY NC) where the readers can reuse, download, distribute the article in whole or part by mentioning proper credits to the authors.
Gastrointestinal Reflux Related Aspiration (GRASP) and Airway Injury after Lung Transplantation: Insights into Pathophysiology and Role of Airway Biomarkers for Risk Stratification
Lung transplantation remains the only long term treatment for end-stage pulmonary disease. The main limitation to allograft survival beyond the first year post transplant is development of chronic lung allograft dysfunction (CLAD). Among survivors, CLAD will develop in virtually all recipients and often will show signs of airway injury before any clinical manifestations appear. There is currently no specific treatment available and management depends largely on modification of risk factors. Recent efforts by our group and others have focused on understanding the underlying pathophysiology and development of clinical biomarkers to diagnose CLAD early and allow risk stratification before irreversible allograft injury.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p1-7 | DOI: 10.33696/Gastroenterology.6.058
Disease Resolution after Cessation of Treatment in Patients with Eosinophilic Esophagitis
Eosinophilic esophagitis (EoE) is a chronic inflammatory condition of the esophagus. EoE is triggered in most patients by dietary allergens and mediated by type 2 immune responses. Over the past 3 decades, substantial progresses have been made in understanding EoE pathogenesis, management, and natural history. EoE affects children and adults, and the incidence and prevalence have increased over time. Untreated EoE can lead to severe complications including food impaction, small caliber esophagus, esophageal stricture, and esophageal perforation.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p8-12 | DOI: 10.33696/Gastroenterology.6.059
Food Protein-Induced Allergic Proctocolitis (FPIAP): New Insights into Pathogenesis and Implications
Food protein induced allergic proctocolitis (FPIAP) is one of the earliest presentations of food allergies in infancy. It is a non-immunoglobulin E (IgE)-mediated condition. Although the inflammation is located at the rectosigmoid colon, clinical symptoms are not limited to mucousy, bloody stools and often include gastroesophageal reflux (GER), feeding difficulties, irritability and poor sleep.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p13-18 | DOI: 10.33696/Gastroenterology.6.060
norUDCA, a Novel Therapeutic Approach to the Disposal of A1- antitrypsin Mutant Z Proteins
α1-antitrypsin deficiency (AATD) is a well-known genetic disease. No effective medical therapy is currently available for the liver disease. 24-norursodeoxycholic acid (norUDCA) has shown potent anti-cholestatic, anti-inflammatory, and anti-fibrotic properties in experimental and human cholestatic liver diseases. In this minireview, we discuss the role of exogenous norUDCA in reducing accumulation of a1-antitrypsin mutant Z proteins (AATZ) in the livers of PiZ mice and the in vitro model, HTOZ cells.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p19-21 | DOI: 10.33696/Gastroenterology.6.061
Abdominal Migraine in Children and Adolescents at a Single Tertiary Pediatric Gastroenterology Center: A Twelve-yea Experience on Clinical and Therapeutic Findings
Observational, retrospective cohort single-center study in consecutive cases of children and adolescents, referred for initial evaluation of chronic abdominal pain at the Pediatric Gastroenterology Outpatient Clinic. Inclusion criteria: Age between 4 and 17 years; Diagnosis of AM defined from structured questionnaires according to three consensus criteria (Rome III, Rome IV criteria, and The International Classification of Headache Disorders).
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p22-29 | DOI: 10.33696/Gastroenterology.6.062
Cholestatic Pruritus: Current Management Approach and Emerging Therapies – Mini Review
Cholestatic Pruritus is a phenomenon that occurs in disease processes that impair bile flow. This condition poses significant challenges to quality of life and is often underdiagnosed and undertreated. While the direct cause of cholestatic pruritus remains unclear, it likely involves a complex interplay between multiple biochemical pathways. Due to recent advances in diagnostic tools, more biochemical pathways of cholestatic pruritis have been discovered.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p30-34 | DOI: 10.33696/Gastroenterology.6.063
A Case Series of Rapid Resolution of Pediatric Eosinophilic Esophagitis with Dupilumab Treatment as Demonstrated by Sedation-Free Transnasal Esophagoscopy (TN-Eso)
Eosinophilic esophagitis (EoE) is a chronic inflammatory disease of the esophagus. Dupilumab, a treatment for EoE, requires an initial endoscopic evaluation no sooner than 12 weeks after initiation. As it is costly and pediatric patients often experience fear and pain associated with the injection, this could lead to non-adherence or premature cessation of therapy. Here, we report a case series, as part of a larger ongoing study, in which subjects demonstrated an earlier response to dupilumab.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p35-39 | DOI: 10.33696/Gastroenterology.6.064
Upregulation of Downstream Angiogenic Genes Using mRNA for the Transfection of Transcription Factor Hypoxia Inducible Factor 1 Alpha: A Short Communication
Hypoxia-inducible factor 1-alpha (HIF-1α) plays a critical role in regulating cellular responses to low oxygen levels. In our study, we transfected HIF-1α mRNA into human dermal fibroblasts and assessed its biological activity by measuring the upregulation of downstream angiogenic genes, aiming to investigate the delivery mechanism of HIF-1α mRNA and its functional impact. In this short communication, we will describe our transfection methodology, present the results we obtained, and discuss the potential implications of these findings for future therapeutic applications.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p40-44 | DOI: 10.33696/Gastroenterology.6.065
Multifaceted Strategies for Managing Gastroesophageal Reflux Disease: A Study of Pharmacological and Non-Pharmacological Interventions
Gastroesophageal Reflux Disease (GERD) is a chronic condition characterized by the retrograde flow of gastric contents into the esophagus, leading to symptoms such as heartburn, regurgitation, and potential esophageal injury. The pathophysiology of GERD primarily involves dysfunction of the lower esophageal sphincter (LES), impaired esophageal clearance, delayed gastric emptying, and transient LES relaxations. Additional contributing factors include hiatal hernia and obesity. The pharmacological management of GERD focuses on acid suppression and includes the use of proton pump inhibitors (PPIs), H2-receptor antagonists, antacids, and prokinetic agents.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p45-52 | DOI: 10.33696/Gastroenterology.6.066
Liver Transplantation in an Adolescent Patient Post Extended Right Hepatectomy for Undifferentiated Sarcoma
Undifferentiated embryonal sarcoma of the liver (UESL) is an uncommon malignant neoplasm in the pediatric population, accounting for a small fraction of primary hepatic tumors but associated with an aggressive clinical course and poor prognosis. Surgical resection remains the mainstay of treatment; however, extended hepatectomy can leave patients with limited functional reserve and predispose them to hepatic failure, making liver transplantation (LT) a therapeutic alternative in selected cases.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p53-56 | DOI: 10.33696/Gastroenterology.6.067
A Dual Mechanism Hypothesis for Celiac Disease: Intraluminal Pressure-Induced Villous Compression and Nitrate-Driven Motility Impairment
Celiac disease (CD) is an immune-mediated enteropathy triggered by gluten ingestion in genetically predisposed individuals, resulting in villous atrophy, crypt hyperplasia, and mucosal inflammation. While immunologic mechanisms are well characterized, the role of mechanical and biochemical factors in disease onset remains underexplored.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p57-59 | DOI: 10.33696/Gastroenterology.6.068
Congenital Diaphragmatic Hernias: An Update on Management Strategies and Outcomes
Congenital diaphragmatic hernia (CDH) is a developmental defect of the diaphragm, occurring in approximately 1 in 3,000 live births with a high mortality rate of between 30 and 50%. This narrative review provides an update on antenatal and postnatal management strategies and current outcomes emphasizing where further research is required. Fetal endotracheal obstruction (FETO) has been demonstrated in a large RCT to improve survival in the most severe CDH and is now adopted into clinical practice.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p60-77 | DOI: 10.33696/Gastroenterology.6.069
Endoscopic Palliation Therapy with Esophageal SEMS in a Case of Malignant Esophageal Stricture with Trachea-Esophageal Fistula
Esophageal cancer, a highly aggressive malignancy, frequently presents with advanced-stage dysphagia, significantly impacting patient quality of life. While surgical resection offers the best chance for cure in early stages, many patients are diagnosed with unresectable or metastatic disease, necessitating palliative interventions to alleviate symptoms.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p78-80 | DOI: 10.33696/Gastroenterology.6.070
Food Protein-induced Allergic Proctocolitis with Breastfeeding or Formula Feeding at Symptoms Onset—A Ten-Year Experience at a Single Tertiary Center
Aim: This study evaluates the sociodemographic, clinical, and anthropometric data of infants diagnosed with Food Protein-Induced Allergic Proctocolitis (FPIAP), categorized as exclusively breastfeeding or formula feeding at the onset of symptoms. This division allows us to compare the effects of different feeding on the development of FPIAP. Methods: This retrospective, observational, single-center study included infants ≤36 months diagnosed with FPIAP. Exclusion criteria were chronic morbidities to ensure a focused study population.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p86-94 | DOI: 10.33696/Gastroenterology.6.072
Females with Autoimmune Liver Diseases are at Increased Risk of Major Adverse Cardiovascular Outcomes: A Nationwide Matched Cohort Study
Cardiovascular disease (CVD) remains a leading cause of death in women. Atherosclerotic Cardiovascular Disease score does not encompass inflammatory diseases, which is associated with increased CVD risk. This score may underestimate risk in women with autoimmune liver diseases (AILD) such as autoimmune hepatitis (AIH), primary biliary cholangitis (PBC), and primary sclerosing cholangitis (PSC). We investigated if women with AILD had increased CVD risk compared to female and male controls.
Arch Gastroenterol Res, 2025, Volume 6, Issue 1, p95-100 | DOI: 10.33696/Gastroenterology.6.073
The Nature of Radiation-induced Inherited Recessive Gene Mutations in Drosophila Melanogaster
The nature of gene mutations induced by ionizing radiation in germ cells and transmitted to offspring remains one of the most important problems in radiation genetics of higher eukaryotes. The data accumulated in this field were obtained by different authors under different experimental conditions which does not give a complete insight about the nature of radiation-induced inherited mutations at different genome levels (chromosome, gene, DNA).
Karyotypic Profile of Chronic Myeloid Leukemia in Patients Diagnosed at Tertiary Level in Afghanistan
Balanced translocation resulting in fusion of the Abelson gene (ABL1) from chromosome 9q34 with the breakpoint cluster region (BCR) gene on chromosome 22q11.2 is the pathognomonic molecular driver of CML. The resulting BCRABL 1 fusion gene is both the diagnostic as well as therapeutic target of CML. The first agent with tyrosine kinase inhibitor activity that was licenced in 2000 for treatment of CML patients, was Imatinib, gradually followed by multiple agents with higher efficacy.
Escherichia coli Stress, Multi-cellularity, and the Generation of the Quorum Sensing Peptide EDF
Bacterial communication via quorum sensing (QS) molecules, as well as toxin-antitoxin (TA) gene modules located on bacterial chromosomes are well-studied mechanisms. Escherichia coli mazEF is a stress-induced TA system mediating cell death requiring a QS extracellular death factor (EDF), the pentapeptide NNWNN. MazF is an endoribonuclease specific for ACA sites. During adverse conditions, the activated MazF generates a stress induced translation machinery, composed of MazF-processed mRNAs and selective ribosomes that specifically translate these processed mRNAs.
Constitutively Active Death Receptor Induces Apoptosis in Mammalian Cells
Apoptosis is a physiological response in development and homeostasis of metazoans. Apoptosis is triggered during pathological events as a means to renew affected tissues and eliminate cancer cells. The immune system regulates the extrinsic pathway of apoptosis, where signals such as TNFα or displayed ligands on the surface of immune cells trigger signal cascades by death receptors present on targeted cells. Therapeutics, like Doxorubicin, lead to apoptosis successfully.
Commentary on NOBOX Mutations in Premature Ovarian Insufficiency
NOBOX is an ovarian specific transcription factor that plays an important role in follicular growth and survival. Nineteen NOBOX variants have been previously associated with premature ovarian insufficiency (POI). Disease severity in patients with heterozygous and homozygous mutations largely overlap however, hampering genotype-phenotype correlations. We recently reported the first case of biallelic truncating mutations (NM_001080413.3 (NOBOX):c.826C>T, p.(Arg276*) and NM_001080413.3(NOBOX):c.1421del, p.(Gly474Alafs*76)) of NOBOX in two Belgian sisters with POI.
Prevalence of Symptom Clusters in Cancer Patients at First Presentation in Palliative Care Clinic as per Different Disease Groups
Cancer has its own disease burden and patients usually suffer from symptom clusters when they are referred for palliative treatment. Identification of symptom cluster trajectories will help clinician to take into account measures that can optimize quality of life of palliative patients. Therefore the aim of this paper is to determine the overall prevalence of symptoms and symptoms clusters in different disease groups according to etiology at the time of first visit to Palliative care clinic by using HIS Palliative First Assessment note indicating Edmonton symptom scale.
Chimeric Antigen Receptor CAR NK Cells Emerging Immunotherapy for the Treatment of Cancer
Although NK cells are recognized as effector lymphocytes of the innate immune system, they also regulate the adaptive immune response by releasing inflammatory cytokines and developing immunological memory. Unlike other lymphocytes such as T or B cells, NK cells do not express rearrangeable, antigen-specific receptors.
pMB FLASH - Status and Perspectives of Combining Proton Minibeam with FLASH Radiotherapy
Proton minibeam radiotherapy (pMBRT) is an external beam radiotherapy method with reduced side effects by taking advantage of spatial fractionation in the normal tissue. Due to scattering, the delivered small beams widen in the tissue ensuring a homogeneous dose distribution in the tumor. In this review, the physical and biological principles regarding dose distribution and healing effects are explained. In the last decade, several preclinical studies have been conducted addressing normal tissue sparing and tumor control in-vitro and in-vivo, using human skin tissue and mouse or rat models. The major results acquired in these studies are summarized. A further newly emerging therapy method is FLASH radiotherapy, i.e. the treatment using ultra-high dose rates. The possibility of combining these methods in proton minibeam FLASH therapy (pMB FLASH) is worked out. Additionally, technical feasibility and limitations will be discussed by looking at simulations as well as preclinical studies and also pointing out new ways of delivering the desired tumor dose, such as interlacing. We will also highlight the opportunities that emerge regarding high dose radiation, hypofractionation and the combination with immunotherapy.
Flow Cytometric Characterization of Accidental Cell Death Highlights Connections to Regulated Cell Death
Damage-Associated Molecular Patterns (DAMPs) are known by their nature to cause inflammatory responses in numerous disease states from cancer, trauma to age related diseases (e.g. atherosclerosis, Alzheimer’s and Parkinson’s diseases), these molecules are released by cells undergoing cell death.
Emerging Role of TRPML1 Mucolipin Endolysosomal Channel in Cancer
The transient receptor potential mucolipin 1 (TRPML1) is an endolysosomal channel belonging to the TRP family. Clinically, mutations of TRPML1 have been responsible for a severe lysosomal storage disorder called mucolipidosis type IV.
Manipulating Oxidative Stress Following Ionizing Radiation
It is now well accepted that the ionizing radiation-generated reactive oxygen species (ROS), that constitute ~2/3 of the effects of external beam radiation, do not only produce direct tumor cell death, but also affect the surrounding microenvironment. Moreover, this indirect effect of radiation may result in systemic effects, specifically the initiation of an inflammatory response.
Activation of NLRP3 Inflammosome by N4-Acetyl Cytidine and Its Consequences
N4-acetylcytidine (N4A) is an organic compound and a metabolite of transferrable ribonucleic acid. Its molecular formula is C11H15N3O6. Earlier studies suggest that N4A was mainly found on tRNA and 18S rRNA, while recent studies have shown that there is also a large amount of N4A on mRNA, whose abundance is not even lower than the m7G cap modification carried by mRNA.
Cyclic Nucleotide Signaling Pathways in Apicomplexan Parasites Provide a Valuable Source for Novel Drug Targets
Malaria is one of the most important disabling human, tropical disease caused by different Plasmodium species, which are protozoan parasites belonging to the Apicomplexa. The Apicomplexan parasites have a plastid like structure the “apicoplast” and comprise the genera Plasmodium, Toxoplasma and Cryptosporidium causing malaria, toxoplasmosis, and cryptosporidiosis.
COVID-19 Clinical Research
While the global COVID-19 pandemic has challenged the entire humanity and health systems, it also triggered researchers to urgently perform clinical trials to assess the safety and efficacy of many agents and modalities to combat COVID-19. As of April 22, over 650 clinical studies have been registered both in USA and internationally. Results from these studies are also coming at a brisk pace in this unprecedented emergency.
Ubiquitin Proteasome System Regulates Biological Particles Interaction in Particle Disease (PD) via NF-κB Signaling
Considering their outstanding mechanical character, it is inevitable to utilize titanium and titanium composite for biomedical engineering application [1-6]. However, the particles releasing from these bulks or composites of biomaterials after long term implanting in human body will cause cell apoptosis or cell death, inflammation, bone
Macular Microcirculation after Rhegmatogenous Retinal Detachment Repair Evaluated by OCT-Angiography
In the process of rhegmatogenous retinal detachment (RRD), retinal homeostasis may be adversely affected with resultant modifications in retinal and choroidal tissue. Hypoxia and nutrient deprivation along with inflammation at the detached retina may lead to morphological and microvascularity alterations. These changes imply that the functional status of the macula may not be entirely restored despite anatomical repair.
Therapeutic Values of Ketamine for COVID-19-Cared Patients: An Expert’s Point of View
Ketamine has long been used in the field of anesthesia [1]. Its rapid and long-acting analgesic effects associated with its dissociative properties have also established its use in prehospital and emergency department patients.
Focal Aggregates of Normal or Near Normal Uveal Melanocytes (FANNUMs) in the Choroid. A Practical Clinical Category of Small Ophthalmoscopically Evident Discrete Melanocytic Choroidal Lesions
Focal aggregate of normal or near normal uveal melanocytes (FANNUM) of the choroid is a term the author has proposed to categorize small melanocytic choroidal lesions that are not detectably thicker than surrounding normal choroid by B-scan ocular ultrasonography. In this article, the author describes the clinical features of small melanotic choroidal lesions he categorizes clinically as FANNUMs and discusses the presumed compositional spectrum of such lesions.
Uniportal VATS Lobectomy for Lung Cancer: Feasibility and Cost Effectiveness in a Single Center Experience
In last decades, video-assisted thoracic surgery (VATS) together with robotic-assisted thoracic surgery (RATS) can be considered the biggest innovation in thoracic surgery. This approach drastically changed the way of performing surgical operations, improving patient’s outcome undergoing thoracic surgery.
A Bioinformatics Protocol for Rational Design of Peptide Vaccines and the COVID-19 Rampage
The currently ongoing coronavirus pandemic, the SARSCOV- 2, interchangeably referred to as the COVID-19 infection, has in a short span of time altered the ways and means of almost all of mankind. So strong has been its effect that all human activity ceased in one way or another for a considerable time, led to significant loss of life and economic drain of.
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